rs219900656 SNP Detail

Summary

• ID
  rs219900656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12442988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCATACT CCAAGGGAGA
  TCAGAGATGG AGATAGTCTG GTGAGAAGAG AGGCTAGACT TGTTGTTCAA GAGTTCCTTG
  TTGTTCTTGT GTTCCTATTA TTACTGGGAT GTTTAATAAC AAATGCTTAC TGGAAAAATT
  TAAAACTGCC TGAAAATAAG GAGCCATTTA AGTGGTCAGT ATTCACGGCT GGGAAGATGG
  Y
  TCAGTCGCGT GCCTGCTATT TGAGCATGAG AATCTTGAGT ATGTATCCCC AGCACCCCTG
  TAAAAGCATG GATGGTGGTA TGAACCTGGA ATCTCAGCAC TCGCAGGTAT GGACAGGTGG
  CACATGGGGC TCATTGGTCC ATCAGCCTAT CCTAGCCAAA ATGGTAATTT CCAGGTTCAC
  TGAGAGAACC CTGCTTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401772583	MGP_WTSI_19_12540114	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219900656					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401772583	MGP_WTSI_19_12540114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12442988 () rs orientation: forward

Symbol	Name	Function Class
Dtx4	deltex 4, E3 ubiquitin ligase	714 bp downstream
Mpeg1	macrophage expressed gene 1	339 bp downstream
Rr356716	regulatory region 356716	413 bp proximal
Rr356717	regulatory region 356717	1813 bp proximal
Rr362996	regulatory region 362996	1787 bp distal
Tssr155326	transcription start site region 155326	806 bp downstream
Tssr155327	transcription start site region 155327	718 bp downstream
Tssr155328	transcription start site region 155328	674 bp downstream
Tssr155329	transcription start site region 155329	117 bp upstream
Tssr155330	transcription start site region 155330	180 bp upstream
Tssr155331	transcription start site region 155331	217 bp upstream
Tssr155332	transcription start site region 155332	234 bp upstream
Tssr158414	transcription start site region 158414	1815 bp upstream
Tssr158415	transcription start site region 158415	1770 bp upstream
Tssr158416	transcription start site region 158416	1326 bp upstream
Tssr158417	transcription start site region 158417	347 bp upstream