rs219910799 SNP Detail

Summary

• ID
  rs219910799
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16348250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGG GCGCTGGGGG GGGCGCTCCC
  W
  CCCCTCCCCC TCCGGCTCCT CCATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322111621	CHEV_7_17199674	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219910799					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16348250 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	within coordinates
Cpgi18383	CpG island 18383	within coordinates
Gm29443	predicted gene 29443	within coordinates
Rr400125	regulatory region 400125	1050 bp upstream
Rr642706	regulatory region 642706	491 bp distal
Rr642707	regulatory region 642707	within coordinates
Rr642708	regulatory region 642708	658 bp proximal
Rr642709	regulatory region 642709	763 bp proximal
Tssr64615	transcription start site region 64615	1282 bp upstream
Tssr70753	transcription start site region 70753	223 bp downstream
Tssr70754	transcription start site region 70754	288 bp downstream
Tssr70755	transcription start site region 70755	345 bp downstream
Tssr70756	transcription start site region 70756	453 bp downstream
Tssr70757	transcription start site region 70757	467 bp downstream
Tssr70758	transcription start site region 70758	524 bp downstream
Tssr70759	transcription start site region 70759	556 bp downstream
Tssr70760	transcription start site region 70760	633 bp downstream
Tssr70761	transcription start site region 70761	729 bp downstream
Tssr70762	transcription start site region 70762	748 bp downstream
Tssr70763	transcription start site region 70763	941 bp downstream