rs219912449 SNP Detail

Summary

• ID
  rs219912449
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33196499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGCCCCA GGGAAAAACA
  TATCAAGGGG TTGGGAAGGA GCTCCGCGCA CACTTTAGAA CGCTGAGTTC GTGTTTGGGT
  TATCTTTCCA CCACTCCGCT GCATAATTTT ATCATGAGGA AGATTCAACC TCGTGCATGA
  AAACTAAAAT CAAGGTTAAA GTAATCTTCC AGCTGAGTAC TGCGCTGGCA TCTGAAAAAA
  M
  CCCCTCCTGA GAACACGCTC CGCTGTGACT ACTGGGACAG GTGACGATGT CCCGTCACCT
  GAAGGGGGAA ATACATCACG GAACATTTAA AAAATAGTGC TTTCCCGGAA CACCGCGACA
  GCGGCTAAGT GCTGGGACTG TGGAGCGCCC TGTGCAGGCG GGAGAGGCGG CAAGTCTGGC
  TGATGTTTGC CCTTCAGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357482706	MGP_WTSI_3_33041272	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219912449					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357482706	MGP_WTSI_3_33041272	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33196499 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13064	CpG island 13064			within coordinates
Pex5l	peroxisomal biogenesis factor 5-like			Intron
				Noncoding-Transcript-Variant
Rr575054	regulatory region 575054			within coordinates
Rr575055	regulatory region 575055			722 bp proximal
Tssr32953	transcription start site region 32953			635 bp downstream
Tssr32954	transcription start site region 32954			658 bp downstream
Tssr32955	transcription start site region 32955			675 bp downstream
Tssr32956	transcription start site region 32956			774 bp downstream
Tssr32957	transcription start site region 32957			821 bp downstream
Tssr32958	transcription start site region 32958			849 bp downstream
Tssr32959	transcription start site region 32959			877 bp downstream
Tssr32960	transcription start site region 32960			925 bp downstream
Tssr32961	transcription start site region 32961			944 bp downstream