rs219915546 SNP Detail

Summary

• ID
  rs219915546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55564466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGCCCA AATTCTCAGG
  TTTTTAATTA TTAAAAAAGT GCCAGGCATG GTGGTGCACG CCTTTAATCC CAGCATTCAG
  GAGGCAGAGG CGGGCGGATT TCTGAGTTCG AGGCCAGCCT GGTCTACAAA GTGAGTTCCA
  GGACAGCCAG GGCTACACAG AGAAAGCCTG TCTCGAAAAA CCATAAAAAA AAAAAAAAAA
  R
  GCTCAGACAG TAAGGGTGCA TTGTCTTATA AGCCTGGTGG CCTGAGTTTT ATCACCAGAG
  CCCCCACAAA GGCAGAAGGA GAGAACTGGC TCCACAGAGT TGTGCTCTGA CCTTCACACC
  ACACTGTGAC ACACTCATAA CACAAACCAC ATTTTTTTCT TTTTTTTTTT AAGATTTATT
  TATTTATTTA TTTATTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss388686370	MGP_WTSI_13_55518014	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs219915546					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388686370	MGP_WTSI_13_55518014	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55564466 () rs orientation: forward

Symbol	Name	Function Class
BC038268	cDNA sequence BC038268	1061 bp downstream
Cpgi5668	CpG island 5668	1312 bp distal
Cpgi5669	CpG island 5669	1577 bp proximal
F12	coagulation factor XII (Hageman factor)	1305 bp downstream
Pfn3	profilin 3	1421 bp upstream
Rr480459	regulatory region 480459	1090 bp distal
Rr480460	regulatory region 480460	1809 bp proximal
Slc34a1	solute carrier family 34 (sodium phosphate), member 1	1958 bp downstream
Tssr122694	transcription start site region 122694	1402 bp upstream