rs219924950 SNP Detail

Summary

• ID
  rs219924950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:113510001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTAGGCA CGGCTTTGCA
  AACTTGAGAA CACGTCTTAA AGGTCCCGGA GCTAGTCTAG GTCACCCAAG TCGCCGCACC
  AGCTGCCTGG AATTTGTTGG GTAAAACCAG ACCGAGTCAC TGAAATCGGA AAGAAAGCCA
  CGCGCGCCCT CATAGGGAGG AGTCGTGGAG ACACTGACAT CGCTTCACCA TCCAACAGCA
  Y
  CAAGGTCTGC TGTCTTATCC TGGGCCACCC GCAGGTTTTC TCCACTCTGC TCACCGGGTC
  CAACAGGACC CGGCAGGCGG AGCCAAGCTG CCGTGACGTC ACGGGCGGGG GCGTGGGGAA
  GTGTGCCCAG GGGCTGCCAC CCGCCCGGGC CACTGCTAGC GGCGCAGCCA CCGGCGCGCT
  CGCGAGGCCA CCGGCGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323859191	CHEV_11_113480489	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219924950					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113510001 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4077	CpG island 4077			within coordinates
Rr403100	regulatory region 403100			1207 bp downstream
Rr459386	regulatory region 459386			856 bp distal
Rr459387	regulatory region 459387			752 bp distal
Rr459388	regulatory region 459388			within coordinates
Rr459389	regulatory region 459389			312 bp proximal
Slc39a11	solute carrier family 39 (metal ion transporter), member 11			Intron
				Noncoding-Transcript-Variant
Sstr2	somatostatin receptor 2			167 bp upstream
Tssr105751	transcription start site region 105751			143 bp upstream
Tssr105752	transcription start site region 105752			205 bp upstream