rs219946357 SNP Detail

Summary

• ID
  rs219946357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69689603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCTGACGGT AGAGAGCAGA GGCATACAGG ACATAGTAAT
  TCTCAAAGAC GCACTCCTTA AAGCGACACT CTGCTGTGAA ATGTGGCTGA GGAGACAGAT
  Y
  CAGAAAGAGG TGTGGACACA CAACACACAC ACACACACAC ACACACACAC ACACACACAC
  ATACACACAC ACACAGAGAG AGAGAGAGAG AGAGAGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323731580	CHEV_11_69612279	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219946357					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69689603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3148	CpG island 3148	1367 bp proximal
Fgf11	fibroblast growth factor 11	within coordinates
Tssr102534	transcription start site region 102534	1997 bp upstream
Tssr108838	transcription start site region 108838	1598 bp upstream
Tssr108839	transcription start site region 108839	1394 bp upstream
Tssr108840	transcription start site region 108840	1160 bp downstream