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rs219959178 SNP Detail
Summary
  • ID
    rs219959178
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:28219040 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCAGCCAGCC TCCTTGTAGC
    TGCTACACTG TATCTGAAGG GGGAGAGGAA CAGCCAGCCT CCTTGTAGCT GCTACACTGT
    ATCTGAAGGG GGAGAGGAGC AGCCAGCCTC CTTGTAGCTG CTACACTGTA TCTGAAGGGG
    GAGAGGAGCA GCCAGCCTCC TTGTAGCTGC TACACTGTAT CTGAAGCCGG AGAGGAGCAG
    Y
    GGGAAGTCAC GTGACGGACA CAGGCCGGCC ACATGTGCGA GTGGGATCAG GAACTGAGAC
    AGCCTGACAT TCAGTGACTG CAAACTCCAG GTTGGGTAGC ACATAGGAAA GTAGCCAGGA
    GGTCTACTAG TCACACTGCT GTCCTGGGCA CTCTGTGGGC CTGTGAAGTG GTGAGCGAGC
    ATGAGGACAG CCGTGCATGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss325351144 CHEV_17_28137011 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs219959178 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:28219040 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Anks1 ankyrin repeat and SAM domain containing 1 within coordinates
Gm35290 predicted gene, 35290 999 bp downstream
Rr340974 regulatory region 340974 1841 bp distal
Rr340975 regulatory region 340975 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory