rs219959178 SNP Detail

Summary

• ID
  rs219959178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28219040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCAGCC TCCTTGTAGC
  TGCTACACTG TATCTGAAGG GGGAGAGGAA CAGCCAGCCT CCTTGTAGCT GCTACACTGT
  ATCTGAAGGG GGAGAGGAGC AGCCAGCCTC CTTGTAGCTG CTACACTGTA TCTGAAGGGG
  GAGAGGAGCA GCCAGCCTCC TTGTAGCTGC TACACTGTAT CTGAAGCCGG AGAGGAGCAG
  Y
  GGGAAGTCAC GTGACGGACA CAGGCCGGCC ACATGTGCGA GTGGGATCAG GAACTGAGAC
  AGCCTGACAT TCAGTGACTG CAAACTCCAG GTTGGGTAGC ACATAGGAAA GTAGCCAGGA
  GGTCTACTAG TCACACTGCT GTCCTGGGCA CTCTGTGGGC CTGTGAAGTG GTGAGCGAGC
  ATGAGGACAG CCGTGCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325351144	CHEV_17_28137011	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219959178					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28219040 () rs orientation: forward

Symbol	Name	Function Class
Anks1	ankyrin repeat and SAM domain containing 1	within coordinates
Gm35290	predicted gene, 35290	999 bp downstream
Rr340974	regulatory region 340974	1841 bp distal
Rr340975	regulatory region 340975	within coordinates