rs219964685 SNP Detail

Summary

• ID
  rs219964685
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128657194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCATCCTG TCTCTCACCC
  GCTTGGCATT GTCAGCAGCC AAGCAATTTC ATCCCTTCAC TGAACGTGGG GCGCTGCAAA
  AACTTACCCA ATTTTTAAAT TAGTCTAGGA AGGGGTCTGA GCTCAGTCCC TCAAGAAATG
  GGAGTCCTTC CCTTCTAGGA GCGGTTTTAG TTTTTAAACT TCTGCAAGCT CTAATGCCTA
  S
  TTTTGTTTTT TGTTTTGTTT GTTTTAACCC GCTCTTGCCT GTCCCACAAT TCCCCAAATC
  AATTACAGAG TCCGCCCATG CTCCTCCCAG AGTCCCAGTT TCGCATGTCA CTTTCTTCAC
  GGGATCTCTC GAATCTAAGG TTGTCGTTTC GCCGCCCTTC CCAATACTCC CACCGATTTC
  TCTCTGTAAC TTTTTAAAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536209	CHEV_10_128258381	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219964685					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128657194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	129 bp proximal
Dnajc14	DnaJ heat shock protein family (Hsp40) member C14	1877 bp downstream
Ormdl2	ORM1-like 2 (S. cerevisiae)	within coordinates
Rr402366	regulatory region 402366	196 bp upstream
Rr441331	regulatory region 441331	within coordinates
Rr441332	regulatory region 441332	256 bp proximal
Rr441333	regulatory region 441333	583 bp proximal
Rr441334	regulatory region 441334	600 bp proximal
Rr441335	regulatory region 441335	918 bp proximal
Rr441336	regulatory region 441336	1973 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	439 bp upstream
Tssr96457	transcription start site region 96457	1651 bp downstream
Tssr96458	transcription start site region 96458	401 bp upstream
Tssr96459	transcription start site region 96459	420 bp upstream
Tssr96460	transcription start site region 96460	459 bp upstream
Tssr96461	transcription start site region 96461	562 bp upstream
Tssr99967	transcription start site region 99967	251 bp downstream