rs219966692 SNP Detail

Summary

• ID
  rs219966692
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:95254395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGCCTG TGTAAAGCCA
  GGGAGTAACT TAGCAGGATG CTTACCTTCT TTAGGTCCCT AACGTTTTCT GTAAACTTAA
  AAACAAGATG TCGGTGAAAG GTTAGCATGA ACGGACAGGC GGATCCCTCT GGAGTTCTGT
  GTAGTGAGTT GGAGGCCCAA GTTAAACTTT TTAAGCCTCT ACAATGTGCA GGGATAACTA
  R
  GACCAACGTT TTATGAATGG TTGATCCTTT CTTGGTAGAA AACCTCAGAG GAAGTGGAAG
  TGTGTGCCTG TGCTTCTGCA CTCCTAAAGG GTTTTGGTTT TTTGTTGGTT TTTTTGTTGT
  TGGTGGTGGT GTTTTTTTTT TTTTTTTTTT TGAGATCATA CAGATTAATT TTTCTTTGTC
  AGGTGTAGTA AATCTTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381349773	MGP_WTSI_10_94881167	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219966692					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381349773	MGP_WTSI_10_94881167	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:95254395 () rs orientation: forward

Symbol	Name	Function Class
5730420D15Rik	RIKEN cDNA 5730420D15 gene	within coordinates
Cpgi2139	CpG island 2139	839 bp distal
Rr225467	regulatory region 225467	194 bp distal
Rr385140	regulatory region 385140	1308 bp downstream
Socs2	suppressor of cytokine signaling 2	1353 bp upstream
Tssr95359	transcription start site region 95359	1540 bp downstream
Tssr95360	transcription start site region 95360	1266 bp downstream
Tssr95361	transcription start site region 95361	1148 bp downstream
Tssr95362	transcription start site region 95362	149 bp upstream
Tssr99037	transcription start site region 99037	1801 bp upstream
Tssr99038	transcription start site region 99038	1699 bp upstream
Tssr99039	transcription start site region 99039	1672 bp upstream
Tssr99040	transcription start site region 99040	1456 bp upstream
Tssr99041	transcription start site region 99041	1423 bp upstream
Tssr99042	transcription start site region 99042	1264 bp upstream