rs219969540 SNP Detail

Summary

• ID
  rs219969540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19059331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATCTTA GAACCTAATA
  ATCAAGGTGT GATATAAGCC ACAGGATGGG AAGTTTAAAT ATCTACTACT ACACTTTGGA
  GGTTTCATTT TGATTCCTGG TTTCTAGTGA TTTCATTGGT TATTTTTAAA CCTAAAATGA
  GATTCTAAAG ATGACATTCA TGTGGAGGAA GAGAGAATCT CAAGGAGAAT ATATCAATGT
  Y
  TTATGTAAGC ATATTGGCAT GGACAAAAAG ACAAGGCAAT CCCTTTCTCC TTCCTTGAGT
  GTCACTGGGA AGTCTTACTA ACAGGGAATG CAGGAGCAAC ATGGAGAGGA TCATACATAC
  TCAAGAACAT TGTGGCTGTC TCAGTGGCTC AGACATTGTG GCTATCTTAT ATTATTCTAT
  TCCTGGCAAT AGAAAGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss395552125	MGP_WTSI_16_19240674	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs219969540					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395552125	MGP_WTSI_16_19240674	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19059331 () rs orientation: forward

Symbol	Name	Function Class
Gm35545	predicted gene, 35545	within coordinates
Gm56600	predicted gene, 56600	594 bp upstream
Iglv3	immunoglobulin lambda variable 3	627 bp downstream
Rr512770	regulatory region 512770	1015 bp proximal
Tssr137404	transcription start site region 137404	633 bp upstream
Tssr137405	transcription start site region 137405	693 bp upstream
Tssr140323	transcription start site region 140323	523 bp downstream
Tssr140324	transcription start site region 140324	1114 bp downstream
Tssr140325	transcription start site region 140325	1131 bp downstream
Tssr140326	transcription start site region 140326	1226 bp downstream