rs219974516 SNP Detail

Summary

• ID
  rs219974516
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72196568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTTAGGGT GGATAGATAG CAAACAAATC
  AAGTGACAGC TTCCAGCTGT GCTCTCGATT CCTTAGTGTT CCTGTTCTAG CTGCAGCACC
  CACTCTGTCG ACTGTCACAT GGTCCTATCT GAGAGCCAAA CCTCTTGGCT CCAGAGTAAC
  S
  CTGTCACTCT CCCAAGAGAG CTGCCTCTCT GCTAAAGAAG AGTGGGGAGG AGAAGGAACA
  GATTTGAGTA GCAGATTGGA AGCAGAGTTG CCGGAGAAGG AAGGTTGGAA GAGCAAAAGT
  CCACAAAGCT AATGAGATCC CTCTTGCCTG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342090	CHEV_2_72204281	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219974516					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72196568 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			within coordinates
Rr558962	regulatory region 558962			306 bp proximal
Tssr18337	transcription start site region 18337			1208 bp downstream