rs219984236 SNP Detail

Summary

• ID
  rs219984236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:126649264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACGTGCC AAGATATTGA TGACAGGTGT TGAGTCACCT
  TTAGTTTTAA ATCCTTTTGT GGTAGGCAGA AACGAGAACA CACTCACGAA CACACACACA
  Y
  ACACTCTCTC AGCTCCATCC TGGGAGGCTA GCGAAGTTTC CGAGTATAGC TTCTTAGGCT
  ACACCTCATG ATCTTTTCAA TGTGTTTGTG GCCTACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363163005	MGP_WTSI_4_126432715	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	C	T	C	C	C	T	T	T	T	T	C	C	C	C	C	T	T	T	T	T	T	C	C	T	T	T	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219984236					SNP	T	T	T	T	T	C	C	T	C	C	C	T	T	T	T	T	C	C	C	C	C	T	T	T	T	T	T	C	C	T	T	T	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363163005	MGP_WTSI_4_126432715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126649264 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AU040320	expressed sequence AU040320			Intron
				Noncoding-Transcript-Variant
Cpgi14831	CpG island 14831			1155 bp distal
Rr398495	regulatory region 398495			1862 bp downstream
Rr599754	regulatory region 599754			1691 bp distal
Rr599755	regulatory region 599755			814 bp distal
Rr599756	regulatory region 599756			1516 bp distal
Rr599757	regulatory region 599757			10 bp distal
Tssr39018	transcription start site region 39018			1636 bp downstream
Tssr39019	transcription start site region 39019			1591 bp downstream
Tssr39020	transcription start site region 39020			1077 bp upstream
Tssr39021	transcription start site region 39021			1512 bp upstream
Tssr39022	transcription start site region 39022			1535 bp upstream
Tssr43401	transcription start site region 43401			1827 bp upstream
Tssr43402	transcription start site region 43402			1791 bp upstream
Tssr43403	transcription start site region 43403			1742 bp upstream
Tssr43404	transcription start site region 43404			1689 bp upstream