rs219986117 SNP Detail

Summary

• ID
  rs219986117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84739553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGGCGAG TCCGTGTCGA
  GCAAAGCTCA TAAATATTCA AGTCGCGTCC TAATCTCCCC AACACACACA CGCGCACGCC
  GCAATATCAC TCGGGCACCG GCCGCCTCTC GCCGGAGTCA CAATCGCCAA ACTACTTTTG
  CTAACAGTGA GGGTCGGTGC CGGGCTGGGC CCGGAGCAGG AGGCTAGGAG CTGGCCGGTC
  Y
  ATGCACCCTG TTCCCTGGGC AGCTCTAGGA GGGTCCCCTT TCCGGTCGCC CGAGTTGTGC
  AAACGGGGCA GTGGCAGAGA AGACGCCACG CTGGGGTCCC ACGAACCCTG GATCTGCAAA
  CAGTGCTGGA TCGCACGGAA GCGAGGGGGA GAGGGAGAAC TAAGGGTTCC ATCCCAGCCC
  CGGGACATGT TCCAGGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394794282	MGP_WTSI_15_84685782	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219986117					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394794282	MGP_WTSI_15_84685782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84739553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7469	CpG island 7469	within coordinates
Phf21b	PHD finger protein 21B	within coordinates
Rr507072	regulatory region 507072	948 bp distal
Rr507073	regulatory region 507073	within coordinates
Rr507074	regulatory region 507074	687 bp proximal
Tssr135727	transcription start site region 135727	268 bp upstream
Tssr135728	transcription start site region 135728	225 bp upstream
Tssr135729	transcription start site region 135729	207 bp upstream
Tssr135730	transcription start site region 135730	164 bp upstream
Tssr135731	transcription start site region 135731	668 bp downstream
Tssr135732	transcription start site region 135732	691 bp downstream
Tssr135733	transcription start site region 135733	713 bp downstream
Tssr135734	transcription start site region 135734	743 bp downstream
Tssr135735	transcription start site region 135735	760 bp downstream
Tssr135736	transcription start site region 135736	1189 bp downstream