rs219988062 SNP Detail

Summary

• ID
  rs219988062
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75368404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGACCAG ATTTCCCACG
  TCCATCTCCT TTATCCCTGA GTCCTGGCTG CCAGTGACTG TCTAGCGAGG TCTCCAGTTA
  GGTCTAATTC CATGTTTGTG CTGGACGCAG CTCCTTTAGC AGCATCCCCA AGCCCTGCTA
  CAGCCGAATT ACGCTCATAG TAAGGACCAC CAACTAGTCC CCGCCCCCCA ACACTTCCCC
  A
  CCCCCCCGCA CCCGCACACC CCCCCCCCCC AGCTAGCCCG GTAAGAAGCG CAGGCGCACG
  AGGGTTGGGC ACGTCGGGAA CTAGGGGCGG GGCATTGAGC CCCGCCCATC TGCCCCGCCC
  ACTCGATCCA CCCACTGATT TCGCCACCTT AGGCCAGTGG CCCCTAATTC TGCTGCGGGC
  AGCGCAGGAT GCCCGGAGGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57L/J	CBA/J	SPRET/EiJ
ss391575944	MGP_WTSI_14_75530771	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57L/J	CBA/J	SPRET/EiJ
rs219988062					SNP	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575944	MGP_WTSI_14_75530771	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75368404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	172 bp distal
Cpgi6737	CpG island 6737	130 bp proximal
Gm62951	predicted gene, 62951	343 bp upstream
Lcp1	lymphocyte cytosolic protein 1	166 bp upstream
Lrrc63	leucine rich repeat containing 63	83 bp upstream
Tssr4477	transcription start site region 4477	330 bp upstream
Tssr126606	transcription start site region 126606	143 bp upstream
Tssr126607	transcription start site region 126607	262 bp upstream
Tssr126608	transcription start site region 126608	309 bp upstream
Tssr126609	transcription start site region 126609	568 bp upstream
Tssr126610	transcription start site region 126610	620 bp upstream
Tssr126611	transcription start site region 126611	1057 bp upstream
Tssr126612	transcription start site region 126612	1082 bp upstream
Tssr129761	transcription start site region 129761	359 bp upstream
Tssr129762	transcription start site region 129762	342 bp upstream
Tssr129763	transcription start site region 129763	315 bp upstream
Tssr129764	transcription start site region 129764	21 bp upstream
Tssr129765	transcription start site region 129765	41 bp downstream
Tssr129766	transcription start site region 129766	611 bp downstream
Tssr129767	transcription start site region 129767	653 bp downstream