rs219989686 SNP Detail

Summary

• ID
  rs219989686
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTGGAGCG GTAGGACCGC GCCCAGGCCT
  GAGGTCCGGC TTGGGCCCTG GAGACCGGCG AGTGGACGGC CTCGAGGGCG CCCTCTGGTG
  CTTCTAACCC AGGCCTTGGG CGCAGTTTTC CTGGAGAATC CACAGTCTTG ATTCTTTTAA
  S
  AACTTTCTGG GTGCTCTACC ACGTGCAGAG CTCCGCAAGG TACAGTGAAA ACAACACAAG
  ATAAACACCC CGTCTTACAG AGGACCTCCA AATAAAGTGG ATCAGGTCTG ACAGGTAGTT
  TAATGTTTCC AAGTATCAGT Tttttgtttt                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353664	CHEV_7_109399511	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219989686					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	13 bp distal
Rhog	ras homolog family member G	879 bp upstream
Rr652562	regulatory region 652562	920 bp distal
Rr652563	regulatory region 652563	384 bp distal
Rr652564	regulatory region 652564	55 bp distal
Tssr2354	transcription start site region 2354	721 bp downstream
Tssr68328	transcription start site region 68328	1304 bp downstream
Tssr68329	transcription start site region 68329	1283 bp downstream
Tssr68330	transcription start site region 68330	742 bp downstream
Tssr73939	transcription start site region 73939	1623 bp upstream
Tssr73940	transcription start site region 73940	1576 bp upstream
Tssr73941	transcription start site region 73941	1523 bp upstream
Tssr73942	transcription start site region 73942	1438 bp upstream
Tssr73943	transcription start site region 73943	911 bp upstream
Tssr73944	transcription start site region 73944	874 bp upstream
Tssr73945	transcription start site region 73945	859 bp upstream
Tssr73946	transcription start site region 73946	663 bp upstream
Tssr73947	transcription start site region 73947	518 bp upstream
Tssr73948	transcription start site region 73948	482 bp upstream
Tssr73949	transcription start site region 73949	449 bp upstream
Tssr73950	transcription start site region 73950	402 bp upstream