rs219991899 SNP Detail

Summary

• ID
  rs219991899
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84107315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCATTGC AGACATTCGG
  GTGGCACACT AGTTGTTGCC AGATCTGACT TTTCTACCCC AGGCTTCCCA CCTTAATGAT
  TTTCCACATC GCTAATCTTT ATTAAGGGGT GAAGTGGAGG AAGTGTGGGA CTTTACTGTG
  CTCAGTTCAG GTCATACCAC ACTGAGGTCT GCTGGGAGCA TCCTCTCAAT GCTGGACTGT
  G
  GGGGGGGGGG GTTCCTCTGT GCCATTTCGA AGGTCCCAGC CCGGTGTGTT GGAAGCTGGA
  TAAAATTCCG GAAGAGGGGA GTTCTGGTTA TATCCAAGCA GTAAACTCTG TACCAGAAAG
  TACCCTAGGT ATCCTGGAAG GCCAAAATGG CGAAACTTAA CTACTCAAGT AGCTGGGTGT
  AAAGATTAGT CCAATCAGTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401475741	MGP_WTSI_18_84258582	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219991899					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401475741	MGP_WTSI_18_84258582	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84107315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10337	CpG island 10337	191 bp distal
Gm58899	predicted gene, 58899	1295 bp downstream
Ptgr3	prostaglandin reductase 3	within coordinates
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	111 bp downstream
Tshz1	teashirt zinc finger family member 1	1484 bp upstream
Tssr152202	transcription start site region 152202	1503 bp downstream
Tssr152203	transcription start site region 152203	1012 bp downstream
Tssr152204	transcription start site region 152204	984 bp downstream
Tssr152205	transcription start site region 152205	947 bp downstream
Tssr152206	transcription start site region 152206	497 bp downstream
Tssr154126	transcription start site region 154126	1474 bp upstream