rs219994736 SNP Detail

Summary

• ID
  rs219994736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110009269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGCCTG GTAGGATTTT
  TCTGAGAACC TGATAGGTGT GGCCACTGGG CCTTCCAGGT AAAATGGGAA CTGAGACTTA
  GGAATGGAGA TGGGTTCTAG GGGCCGAGGA AAGGGAAAAC AGAGTAGATA CCTCAGATTT
  CCTCTTCTCA GTCTAGCAGG CCTTTAGTCC TAAATGTGCA AGGCAGGGCC CTCCTTGGCC
  Y
  ACTTTTTTCA TTCTTCACTG TTACTCCTCC CAGCCTTCCT CCCTTCCCAT CTATCGCATT
  ACCCAGACTT TTATACTCCT CTGAGACAGC CCCTTGCTGT GGTTGGGACC ATCCTGAATG
  ATTTGCATGC CCAGCTCACA GTTGATCCAT AGTGGAACTG GGCTGAGGGA CCCTAGAGCT
  TTTCACAAAG TGGTTCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255181	CHEV_4_109824677	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219994736					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110009269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	447 bp proximal
Gm33070	predicted gene, 33070	597 bp upstream
Rr84118	regulatory region 84118	132 bp proximal
Tssr38368	transcription start site region 38368	581 bp upstream