rs219999470 SNP Detail

Summary

• ID
  rs219999470
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109507924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGCTTT TTTCACTTAG
  CATGTTTGAC TGCTCATTCA TTAGGTAACT TCTATTTGCT CTTCATTCCC TTTTGTGCTA
  AAGATATTCA ATTTTATGGA GTGTATACAT CCATTCTTCA CTCTTGGTAT CATTTTCTAT
  TGCTTTTCCT AACTTTAAGA ACTATGTCAA GGCTTTGTCA GCCAAGCTTC TTTGGGAGCA
  A
  CTGGCATTGG GGTTCTCTTC ACCAATGTTT GATCTCCATA AAAGTCTTAT ATTTTCTTTT
  CCTTTCCCTT CCTTTTTCCT TCCTTCCTTT CTTTTTTTAA AGTTTTATTT ATTTAATTTA
  TATCTTCATG TACACCTGCA TACCAGAAGG GGGCATTAGA TTTCATTATG AGATGGTTGT
  GAGCCATCAT GTGGTTGCTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321254425	CHEV_4_109323332	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219999470					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109507924 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	1700 bp downstream
Gm12811	predicted gene 12811	within coordinates
Gm40227	predicted gene, 40227	532 bp upstream