rs219999711 SNP Detail

Summary

• ID
  rs219999711
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47988329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCTAAT GTCATTTTAC
  ACAGTGAATG ACTCGTTTTA CAGTACCCTG TGCATTTCAT AATAGCTAGA AGAGCTTCGA
  ATGATTCATT GACAAATAAG TGGTTGAAAA CTTGGGGTGA TAGTTGTAAC AGGGACACTT
  ACCAAAGAAC TGCATTGTAT CCCATAAATA AATACAATTT TTAAAATAGT TTTTTTTTTT
  W
  ACATATATGA GTGTTTTGCC TACATATATG TATGTGTACC ACTCGGGTGT CTGGTACCCA
  AAGAGGCTGG AAGAGGATGT TGGATACCCG AACTGGTGTT CTAGACAGCT GGGAACCACC
  ATATAAGTGC TAGAAATTGA ACCAGGTCTC TCCGTTCTTA ACCCCTGAGC CATCTCTCCA
  GCCCCAACCA ATAAAATTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322655776	CHEV_8_48620648	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219999711					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47988329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20329	CpG island 20329	1040 bp distal
Gm63731	predicted gene, 63731	207 bp downstream
Rr186609	regulatory region 186609	328 bp distal
Rr368533	regulatory region 368533	1491 bp downstream
Rr400846	regulatory region 400846	1603 bp downstream
Rwdd4a	RWD domain containing 4A	within coordinates
Trappc11	trafficking protein particle complex 11	1824 bp upstream
Tssr77336	transcription start site region 77336	1585 bp downstream
Tssr81236	transcription start site region 81236	1882 bp upstream
Tssr81237	transcription start site region 81237	1858 bp upstream
Tssr81238	transcription start site region 81238	1817 bp upstream