rs220000880 SNP Detail

Summary

• ID
  rs220000880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21463766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGCTTT GTGTCCTGTA
  TTGAGCTAAA AGTTGCATTT CAAAATTCCA TTCCAAATTG GACCAGTCTG GGTGTGAGTG
  ACTTGTAGAA TAGAAGACGA TTTTGAGTGG TTCTGGATGT CATGGTTTAG ATATGAAGCA
  TCCAACCTAT TTATGCTGAA GGCTTGGTCC TCAGGGGGTG AAGCTGATGA GATATGATTG
  R
  ATCATGAGGG AGTGCCGTGA GGGAAGCTAA GCCACTGAGA GCTTCATAGG TGCTTGGGAG
  TCACTGGGGG CATGTGTTTG AGGAAAATCA GTATCTCTCT CCCTCTCCTT CTTTCCTTCC
  TCTCTCTCTC TTTTCTCTCC CTCTCCTTTA CCCTCCCATT CTCTCAGTTT CCATGAGGTA
  AGCAGCTCTG CCCCATACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325751664	CHEV_19_21560892	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220000880					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21463766 () rs orientation: forward

Symbol	Name	Function Class
2010105D22Rik	RIKEN cDNA 2010105D22 gene	1530 bp upstream
Gm59126	predicted gene, 59126	within coordinates
Rr361557	regulatory region 361557	1691 bp proximal