rs220002013 SNP Detail

Summary

• ID
  rs220002013
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31758490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAAGTTG TAGCTGGGTC
  TGGTGGTAGC AATTAGGAGC CTGAGGCAGG AGGATTGTTC TGAGTGCAAG GCCAGCCAAG
  GTTGTAGAAT GAGGCTTTCG GGGAGAGGAG TCAGTATTAA AGCACTTGCC TTGCATGTGC
  AAGGTCCTGG GTTCAATCTC CATCACTAAC GTGGCCTGCC CCTCCCCCAC CCCCTACCCC
  M
  CCACCCCCGA AAACAGCATG ACAGCTCAAG CCTGAAGCTG AAGCACTATT GCTATGAGTT
  AGAGGTCAGC CTGGGCTACT TAGTAAGGTC CAGGCAATCC TTAGCTACAG AGCTGGACCC
  TATCTTGATA AAAACAAAAC AAACCAGTGT GTAGAAGTTA GAGGGAATGG TTGGGACCCA
  CTTGGGGTCC CATGTTTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395849090	MGP_WTSI_16_31939758	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220002013					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395849090	MGP_WTSI_16_31939758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31758490 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr317640	regulatory region 317640	1690 bp distal
Rr326503	regulatory region 326503	863 bp proximal
Tssr137933	transcription start site region 137933	1153 bp upstream