rs220004636 SNP Detail

Summary

• ID
  rs220004636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42312568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCTTTA GTGTCAATGA
  CCCTAGTAAT ATGTCGCTGG TTAAAGAGAC GGTGGACAGA CTGTTGAAAG GCTATGACAT
  TCGTCTGAGA CCAGATTTTG GAGGTAATGG GATTGCCTTG CAAATAAGAA ACAGCCCAGC
  TCCAGCCCAA GCTGTCTTTT GGGCTTTGTG TGCACTCTCT TTCCTCTCCT TAGTTGTGGG
  Y
  GCATGTGATG TATAGAATGT TTTCCTATTT TACCTTGCTG AGAAACAGAT CCAAACTTAA
  GCCAGTTTCT GTCCAGCACT TGAGAGGTCT TTCAAGAAGA CCCCCTTAGA GTGTGACCAG
  ACTTTGTAAC CGCTCTCGTT CTCCTTCACC GTGATACATC TTTGTTCCCA GTCTGAGGTT
  TCTTGAGATA CAAACCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383144001	MGP_WTSI_11_42235243	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220004636					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383144001	MGP_WTSI_11_42235243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42312568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2744	CpG island 2744	1238 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	536 bp upstream
Rr445405	regulatory region 445405	1974 bp distal
Rr445406	regulatory region 445406	381 bp distal
Rr445407	regulatory region 445407	1587 bp proximal
Rr445408	regulatory region 445408	1713 bp proximal
Tssr100975	transcription start site region 100975	1956 bp downstream
Tssr100976	transcription start site region 100976	1786 bp downstream
Tssr100977	transcription start site region 100977	1298 bp downstream
Tssr100978	transcription start site region 100978	962 bp downstream
Tssr100979	transcription start site region 100979	886 bp downstream
Tssr100980	transcription start site region 100980	501 bp downstream
Tssr100981	transcription start site region 100981	457 bp downstream
Tssr100982	transcription start site region 100982	420 bp downstream
Tssr100983	transcription start site region 100983	408 bp downstream