rs220005485 SNP Detail

Summary

• ID
  rs220005485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106203974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATCAGG GCAAGGTTCA
  AAATCAGGCT TAGCGTCTTC CTGTAGCCTA TCTCACGTGT CTGGGGCATC AGGTTCATGA
  GGCAGTCAGT AGAGGTATGA GAAGGTAAAG TCTGTGAGAG GCCTCATACT AAGCCACTGG
  TGTACACCTC TTCCTGATCT AACCTCTGTC CAGTTGTCTT TCATTAAGGA GAATTTTGGA
  R
  CCTTTCCATT GCTTTTATGT TCACTGGAAT GGCCTCACAT GCAGGACAGC CTTTTGACCT
  GGTTGGGTAC TTTTAACTCT TTCCTCTACA CTTTCCTACA CCCACTCCAA ATCCTCCAGG
  TCTGCCCACC ATCCCCAGGG TGATAAAGGT CGAATCCTTA GCCTGTCACC CGAGGCCCAC
  CTCCCTTACC CTTCTCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323838833	CHEV_11_106174462	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220005485					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106203974 () rs orientation: forward

Symbol	Name	Function Class
Cd79b	CD79B antigen	within coordinates
Cpgi4022	CpG island 4022	1205 bp proximal
Rr386632	regulatory region 386632	within coordinates
Rr458129	regulatory region 458129	1371 bp proximal
Rr458130	regulatory region 458130	1980 bp proximal
Tssr111335	transcription start site region 111335	559 bp downstream
Tssr111336	transcription start site region 111336	1346 bp downstream