rs220005533 SNP Detail

Summary

• ID
  rs220005533
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110484985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAAGTGC CAGGATTAAA
  GGCGTGCGCC ACCACGCCCG GCTGCTATTT GCTTTTAAGC AGGTAAGGTA GCCTGACTCT
  GATTATGCTG CAGCTCCCGA AAGAGATGCG AGATCATTCT TGAGTTCAAA GGAAAAGGCC
  ATGTAGCCAG GCCTCGAACT CAGCAGTTCT GGAGCCAGAG AGTGGATAGC AAGGCTTATG
  M
  GCAACAACTC ATCAGGCGAG TGAGTGCAAG CTGCCACTGG CACTCTGTAG AGAAGGGAGA
  GGCTGACCTC AGAGTGAGTT GGGAATGAGA GTGGCCAAGG AAGGTTTCTG GGTGTTTGTC
  TGGTAGTGGT GCGTTAAGAC AAGGTTATCT TACGTAGCCC AGACTGAACC CGACCCCATA
  ATTTTGATGC CTCAGCCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378907297	MGP_WTSI_9_110558421	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220005533					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378907297	MGP_WTSI_9_110558421	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110484985 () rs orientation: forward

Symbol	Name	Function Class
Ccdc12	coiled-coil domain containing 12	586 bp upstream
Cpgi22385	CpG island 22385	1477 bp distal
Cpgi22386	CpG island 22386	410 bp proximal
Gm42470	predicted gene 42470	within coordinates
Gm69744	predicted gene, 69744	within coordinates
Nbeal2	neurobeachin-like 2	1756 bp upstream
Rr401701	regulatory region 401701	1538 bp downstream
Rr401702	regulatory region 401702	409 bp upstream
Rr687152	regulatory region 687152	1786 bp distal
Rr687155	regulatory region 687155	1900 bp distal
Rr687156	regulatory region 687156	1266 bp distal
Rr687157	regulatory region 687157	228 bp distal
Rr687158	regulatory region 687158	96 bp proximal
Rr687159	regulatory region 687159	821 bp proximal
Tssr87398	transcription start site region 87398	549 bp upstream
Tssr87399	transcription start site region 87399	577 bp upstream
Tssr91642	transcription start site region 91642	1912 bp upstream
Tssr91643	transcription start site region 91643	1836 bp upstream
Tssr91644	transcription start site region 91644	1705 bp upstream
Tssr91645	transcription start site region 91645	1663 bp upstream
Tssr91646	transcription start site region 91646	465 bp downstream