rs220007005 SNP Detail

Summary

• ID
  rs220007005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62442881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCACTC GGGCATTGTT
  TATTACTTGA ATTTTTATCG ATGGCTTCTG GTCTGGATAT TTTTTATTTT CAATTTATCA
  TGTCTATTGT TAGCGAACTT GGATGCCCCG CAGTTGATGA ATGTTCCAAA TGCCAGTTTA
  GTGTTTTGGA AAGGTTTAGC AGTTTGAAAC CATGACAAAA CAGGTTTTAT GTTATGACAA
  R
  AAGGGGAGGA GTTTTGAGTA GAAGTATTTT GTAGGGAATC GAAGATTTTA GTAGGCTTTT
  AAATTTTTAC CTTTTAAATT CAAGGTCAAA ATGCAGATCT TCGTGAAGAC CCTGACCGGC
  AAGACCATCA CCCTAGAGGT GGAGCCCAGT GACACCATCG AGAACGTGAA GGCCAAGATC
  CAGGATAAAG AGGGCATCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383609430	MGP_WTSI_11_62365557	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220007005					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383609430	MGP_WTSI_11_62365557	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62442881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	110 bp distal
Gm12279	predicted gene 12279	959 bp upstream
Gm71785	predicted gene, 71785	1025 bp downstream
Rr246927	regulatory region 246927	within coordinates
Rr386162	regulatory region 386162	780 bp downstream
Tssr102022	transcription start site region 102022	1510 bp downstream
Tssr102023	transcription start site region 102023	1455 bp downstream
Tssr102024	transcription start site region 102024	1198 bp downstream
Tssr102025	transcription start site region 102025	864 bp downstream
Tssr102026	transcription start site region 102026	809 bp downstream
Tssr102027	transcription start site region 102027	770 bp downstream
Tssr102028	transcription start site region 102028	598 bp downstream
Tssr102029	transcription start site region 102029	578 bp downstream
Tssr102030	transcription start site region 102030	552 bp downstream
Tssr102031	transcription start site region 102031	320 bp downstream
Tssr102032	transcription start site region 102032	316 bp downstream
Tssr102033	transcription start site region 102033	285 bp downstream
Tssr102034	transcription start site region 102034	234 bp downstream
Tssr102035	transcription start site region 102035	196 bp downstream
Tssr108430	transcription start site region 108430	1075 bp upstream
Tssr108431	transcription start site region 108431	1036 bp upstream
Ubb	ubiquitin B	within coordinates