rs220008092 SNP Detail

Summary

• ID
  rs220008092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132798742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTCCCCC TCACATTCCC
  CCTTCATAAA CTTCTGCTCT CATAAAAGCT ATACACTAGT GAGATTAATA ATTAAAGACA
  AATGAAAGAG TAGAAAGTGA ATGTTGCAGG TCAGAGCACT GTACACATCC CTACCCATAA
  AATAGACGAT TGTCTTGCTT TTTTGTGTTT GAGTTATGTT GAGAGGAAAA GACAGTTGCA
  Y
  TTCATGAATG CCTTTTGCTG AAGTGACTAG AACTGTGTAG AGTAAAAGAC AAGAATATTA
  GACTTCGGTG AGTTAGCTGA ATATAATAGT CTGGTCATTG TTTTCAGAGT AACAGAGAAA
  TAAGAGGAAG TGAGAGAAAA ACCATACAGA GTCATCTGCC TTGAGATGGT ATTTGACAAC
  AAAATGCTCA TGACTGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359780823	MGP_WTSI_3_132755945	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220008092					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359780823	MGP_WTSI_3_132755945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132798742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13847	CpG island 13847	659 bp distal
Gstcd	glutathione S-transferase, C-terminal domain containing	948 bp upstream
Ints12	integrator complex subunit 12	Intron
Rr398028	regulatory region 398028	1786 bp downstream
Rr398029	regulatory region 398029	923 bp downstream
Rr398030	regulatory region 398030	45 bp upstream
Rr585500	regulatory region 585500	1167 bp distal
Rr585501	regulatory region 585501	1131 bp distal
Rr585502	regulatory region 585502	959 bp distal
Rr585503	regulatory region 585503	458 bp distal
Rr585504	regulatory region 585504	within coordinates
Rr585505	regulatory region 585505	1380 bp proximal
Tssr31768	transcription start site region 31768	1139 bp downstream
Tssr31769	transcription start site region 31769	1108 bp downstream
Tssr31770	transcription start site region 31770	1074 bp downstream
Tssr31771	transcription start site region 31771	1028 bp downstream
Tssr31772	transcription start site region 31772	370 bp downstream
Tssr35744	transcription start site region 35744	1219 bp upstream
Tssr35745	transcription start site region 35745	1198 bp upstream
Tssr35746	transcription start site region 35746	1134 bp upstream
Tssr35747	transcription start site region 35747	942 bp upstream
Tssr35748	transcription start site region 35748	927 bp upstream
Tssr35749	transcription start site region 35749	587 bp upstream