rs220009806 SNP Detail

Summary

• ID
  rs220009806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAAAAACC ATCAAAAAGT
  AGTCATTCCC CTTACTTCTA AATGGACAGG ATGTATATAC ACACACCAAG TATATATTAC
  CAAATCCTAA GATGTACCAA CTGCAGACTT GACTTTTAAC ACAAGAAGGC CATGCAACCG
  AATAGATGGC ACCAACACCA GACAGATCAG ACTCCTTTAA GACTGTTGTG AGGTCAGATA
  R
  CAAGTCCATT TCCAGTAAGC TAGAACTCTG ATCTTCCAAG TTAGGGTCCT GGGAAATGCC
  CAAGAGTCCA AGGTTCGACA ATCTCTTACA CAGTACTTAT ACTTAGAATT TTATCACCTA
  TGTAATTTAG ATAAGAAATT GTACAGCCAT CTGTCTATTT GAAGTAAGCA AAAAAGGAAC
  CCTTTTCGAA AACAACAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513544	CHEV_10_121022583	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220009806					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	720 bp proximal
Rr402304	regulatory region 402304	345 bp upstream
Rr402305	regulatory region 402305	1199 bp upstream
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	690 bp upstream
Tssr96044	transcription start site region 96044	726 bp upstream
Tssr99623	transcription start site region 99623	346 bp downstream
Tssr99624	transcription start site region 99624	374 bp downstream
Tssr99625	transcription start site region 99625	395 bp downstream
Tssr99626	transcription start site region 99626	1183 bp downstream
Tssr99627	transcription start site region 99627	1203 bp downstream
Tssr99628	transcription start site region 99628	1286 bp downstream
Tssr99629	transcription start site region 99629	1314 bp downstream
Tssr99630	transcription start site region 99630	1342 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	1853 bp downstream