rs220011718 SNP Detail

Summary

• ID
  rs220011718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122820056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCAGAG AATTCAAGAG
  TAGAAAGCTG ATTTGCGTCT AAGGCGAGAG CAGAAATGTA AGCATGGGAG TAGTCTCCCT
  TACAGCAGCA AACAGAAACA TATGGAAGCA CTTATAGAGC CCATTATACA AGTATGTTCT
  CTGTGGGCAG CCTAGTTTTG GATGAAACTT ACTTTAAAAG CACAAGAACT ACAAAGGGAA
  Y
  GAGCTAGAAT TCAGGACCAC GAACAAAATT TACTCTCTGT TGTATACAAC AGCATCTACT
  GGCTCACTGT AAAGATGTTA ACAGTATGTA GTAGGCAGAC TGGCTTCAAT GAGGAGTTTT
  GGAAAACGAA ACTGTAGTAC AATTAGAATT CTACTATCCA TTTCCACCAC AAATCAAGAT
  TTTCCATAGT AGACATTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382064115	MGP_WTSI_10_122421207	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220011718					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382064115	MGP_WTSI_10_122421207	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122820056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2309	CpG island 2309	1088 bp proximal
D630033A02Rik	RIKEN cDNA D630033A02 gene	1255 bp downstream
Gm63655	predicted gene, 63655	923 bp downstream
Mirlet7i	microRNA let7i	1489 bp downstream
Rr402310	regulatory region 402310	771 bp upstream
Rr440468	regulatory region 440468	747 bp distal
Rr440469	regulatory region 440469	within coordinates
Rr440470	regulatory region 440470	1670 bp proximal
Tssr99655	transcription start site region 99655	1805 bp upstream
Tssr99656	transcription start site region 99656	1485 bp downstream
Tssr99657	transcription start site region 99657	1899 bp downstream