rs220014053 SNP Detail

Summary

• ID
  rs220014053
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3673083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACAGGA GAGGAAGCTG
  TAATTCCAGC ATTCCAGCAC TCAGGAGATG GATGCAAGAG GATTGAGAAT TCTGGCTATT
  CTCTGCCGCC TGGTGAGCTC AAGGCTAGCC TGTAGTATAT GAGACCCCAT CTTAAAAAGA
  GGGGAGGGCA CAAATGGTGT CACATATTAC CTTTTCCCCG AGGGATGAAG CTGAACTCAC
  K
  TGTACAGTGA TTGTGATTGG CATGGGGCTC CCAGTGTGGA TACTGAACTC TGAAGCCAAA
  GGGAGGATAG TGTGAGTGAG TCCAGGCTGT GAGGCCTGTA CTCTTCCTTC CTTCCCATCA
  CACCCCTTTC CCCATTCCAG CGCCAGGAGC TAGAAGAATT TAAGCAGAAG ATCCGGAAGC
  AGAAAGAAGA GAGACTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373511978	MGP_WTSI_8_3623083	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220014053					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373511978	MGP_WTSI_8_3623083	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3673083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20029	CpG island 20029	1364 bp distal
Pcp2	Purkinje cell protein 2 (L7)	288 bp downstream
Pet100	PET100 homolog	within coordinates
Rr400746	regulatory region 400746	1666 bp downstream
Rr658948	regulatory region 658948	1778 bp distal
Rr658949	regulatory region 658949	1471 bp distal
Rr658950	regulatory region 658950	1616 bp distal
Rr658951	regulatory region 658951	73 bp distal
Tssr76075	transcription start site region 76075	1590 bp downstream
Tssr76076	transcription start site region 76076	1500 bp downstream
Tssr76077	transcription start site region 76077	1474 bp downstream
Tssr80202	transcription start site region 80202	1760 bp upstream
Tssr80203	transcription start site region 80203	427 bp downstream
Tssr80204	transcription start site region 80204	1486 bp downstream
Tssr80205	transcription start site region 80205	1576 bp downstream
Tssr80206	transcription start site region 80206	1838 bp downstream
Tssr80207	transcription start site region 80207	1887 bp downstream
Tssr80208	transcription start site region 80208	1906 bp downstream
Tssr80209	transcription start site region 80209	1942 bp downstream
Xab2	XPA binding protein 2	1772 bp upstream