rs220015563 SNP Detail

Summary

• ID
  rs220015563
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACAATAT TTCACTATCT
  GGGTCTTTTT CAAAATATTT GTCAAATTGT TCTTTGATGG TTTCATATTT CTTGCTAAGT
  GGATCCTCCA GTAAATTAGA TGTGAGTGTC AGGATTTTAC CATTTTGAAT CTGAATGTTC
  AGCTGATTGT CTAAGTCCAG TACATGACTC CTTAGCTCCC AGATCCATTG ACTATACATG
  K
  TTTCCAGTTT GCTCATGGCT ATGACCTCTT GGGTGTTCCT GAAACTGAAA ATGAAGTTTT
  CATTGACAAG AGCTTTCCAC AAATCTTGTA CTCTGAATTT AAAATCTGAG ATTTTTAAGA
  TCCTTCCCCT AGATTCCTTC TGGGCGTTTG AAAGAATTAC ATTCCGTAGT TCCTGGACAT
  TGTAGCTATA GTGAGGATTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322371918	CHEV_7_113649916	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220015563					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105609 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74128	transcription start site region 74128	1978 bp upstream
Tssr74129	transcription start site region 74129	1447 bp upstream
Tssr74130	transcription start site region 74130	1398 bp upstream
Tssr74131	transcription start site region 74131	1187 bp upstream
Tssr74132	transcription start site region 74132	1011 bp upstream
Tssr74133	transcription start site region 74133	354 bp upstream
Tssr74134	transcription start site region 74134	99 bp upstream
Tssr74135	transcription start site region 74135	19 bp upstream
Tssr74136	transcription start site region 74136	16 bp downstream
Tssr74137	transcription start site region 74137	82 bp downstream
Tssr74138	transcription start site region 74138	112 bp downstream
Tssr74139	transcription start site region 74139	146 bp downstream
Tssr74140	transcription start site region 74140	201 bp downstream
Tssr74141	transcription start site region 74141	601 bp downstream
Tssr74142	transcription start site region 74142	744 bp downstream