rs220017617 SNP Detail

Summary

• ID
  rs220017617
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131647516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGAGGTGA GTGTGGACCT CGCCAGTGGA
  GGTTTGGGTT CTGGGACCGA TCAGGAGTCC CAGGCAGCTG AGAGTGAAGC TTGTGCCCTG
  GGCTTGTGGT CTCAGTTGTG GGAGGGACAC CCGGAAGACA GGGGATCCAC ACACCCGCCC
  S
  GGCGGCGGGC GAGTGAGTAG GAAGTCAACA CAGGCAGATG CCTCAGGCGT CAGCCCTGGA
  GAGCAGAGGG AACGGGAGGG CTCAGCGTCT GTGGGGCAGG GGTGCCTTCT CCAGATCCAC
  TTGGGAGGCT CTGCGGCCGG GGGATGCCGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329098	CHEV_4_131476120	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220017617					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131647516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	within coordinates
Gm12992	predicted gene 12992	176 bp upstream
Gm50475	predicted gene, 50475	611 bp downstream
Rr100128	regulatory region 100128	within coordinates
Tmem200b	transmembrane protein 200B	995 bp upstream
Tssr1320	transcription start site region 1320	1485 bp upstream
Tssr39357	transcription start site region 39357	363 bp upstream
Tssr39358	transcription start site region 39358	945 bp upstream
Tssr39359	transcription start site region 39359	993 bp upstream
Tssr43616	transcription start site region 43616	497 bp downstream
Tssr43617	transcription start site region 43617	814 bp downstream