rs220020368 SNP Detail

Summary

• ID
  rs220020368
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145856772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCGCAA TTGAGCCGGG
  GAGGTGAGGA CAAAGTGGCC TTTGGCTCCT GCTTGCTGCT CTTAAAACAA ATAGTGGCGG
  GCTGTTAAAG TTTTCTAAGG GAGCAGGGAG CGGCCTCTCC TTCCTAGCAG GATGTTCTTG
  AAGCCAGCAA GGAAACTGAG CCATAGGGAA GTTAGTCTAT GATGGCTACC TGAATGGATG
  M
  TTTTCTGCAA GGGTGGCATA GACTTCTCAG ACCTTCAAAA GACCGGTTTT GAACTATAAA
  ACCATGTTGG TGGGGCTACA GAGGTGTGTT CTTTTCTTTT GTTTTTGTTT TTTTCGAGAC
  AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT GGAACTCACT CTGTAGACCA GGCTGGCCTC
  GAACTCAGAA ATCCCCCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360110234	MGP_WTSI_3_145813981	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220020368					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360110234	MGP_WTSI_3_145813981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145856772 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13913	CpG island 13913			519 bp distal
Mcoln2	mucolipin 2			Intron
				Noncoding-Transcript-Variant
Rr398113	regulatory region 398113			1316 bp upstream
Rr586937	regulatory region 586937			833 bp distal
Rr586938	regulatory region 586938			945 bp distal
Rr586939	regulatory region 586939			within coordinates
Rr586940	regulatory region 586940			418 bp proximal
Rr586941	regulatory region 586941			1934 bp proximal
Tssr32333	transcription start site region 32333			1188 bp downstream
Tssr32334	transcription start site region 32334			1174 bp downstream
Tssr32335	transcription start site region 32335			1149 bp downstream
Tssr32336	transcription start site region 32336			768 bp downstream
Tssr32337	transcription start site region 32337			732 bp downstream
Tssr36030	transcription start site region 36030			1328 bp upstream