rs220024299 SNP Detail

Summary

• ID
  rs220024299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28228225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGGTGGC GACTTCCTCT
  CCGTGCCCCC TCCCCCTCGC CATGAAGGTA AGTGTTCTGT GCGCACGGAC GCTCCCTACT
  TTTTCCCCCC CTTTTCAAAG TTAACTGAAC TCTTTCAATC TATCCCTATC CTCTCCATTT
  CTCTAACTGC CTGGAGAAAG CTAAACTCCA ATATCGCCGG CAGGGACTCC TATCTTTTCG
  W
  CCCTTACCCT GGGGACACTG CCTCTGCGTC CTTGGAGACT TTTTGCACCG GCTATTCTTC
  AAACCTTTTC AACTATGGAG AAGAGCGAGG GCAGGAAAGA CAGTTCGGGT CACAGGCGGC
  GCGCCTTTTT ACCTCGAGAA CTGGAGTGTA GTTTTACTAC GTGTATTTCA GTGACTGGAT
  AATGATTCGA TTCATCAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390637214	MGP_WTSI_14_29319454	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220024299					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390637214	MGP_WTSI_14_29319454	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28228225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	within coordinates
Cpgi6259	CpG island 6259	1324 bp proximal
Gm2670	predicted gene 2670	1806 bp downstream
Tssr124778	transcription start site region 124778	1663 bp downstream
Tssr124779	transcription start site region 124779	1612 bp downstream
Tssr124780	transcription start site region 124780	1579 bp downstream
Tssr124781	transcription start site region 124781	1506 bp downstream
Tssr124782	transcription start site region 124782	1442 bp downstream
Tssr124783	transcription start site region 124783	777 bp downstream
Tssr124784	transcription start site region 124784	759 bp downstream
Tssr124785	transcription start site region 124785	699 bp downstream
Tssr124786	transcription start site region 124786	651 bp downstream
Tssr124787	transcription start site region 124787	496 bp downstream
Tssr124788	transcription start site region 124788	471 bp downstream
Tssr124789	transcription start site region 124789	433 bp downstream
Wnt5a	wingless-type MMTV integration site family, member 5A	within coordinates