rs220030196 SNP Detail

Summary

• ID
  rs220030196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66211725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGAGCAA TTATAATGCT
  ATACCAGTTA TACCATACAG AAGGCTACGC AGATGTGATT TCTCCCACAC AAAATATCTC
  AATTCCTCAG CTTCCACAAT ACTATTTTTA GACTGGTTGA CCATGGATAG CTAAGAACTG
  ATAACAAGGG ACTGCCCTGT TACCATTTGT TTAATTTGTC ATCTACATTT GAACATCAAT
  R
  TTGACTCTGG TACACACACA CACACACACA CACACACACA CACACACACA CACACACAAA
  CTTATCCACA GATTCATCCA TCCACTTAAT TATTTTCCAT ATTGATATGT AGACACACAC
  ATTTGCTATA AACTAGTATC TCTTCAGGCG GAGAATTTAA ATTTTTCATT TTAGCAATCC
  CCAGAGCCAA TGACTGGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367397	MGP_WTSI_14_66593113	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220030196					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367397	MGP_WTSI_14_66593113	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66211725 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126263	transcription start site region 126263	949 bp downstream
Tssr126264	transcription start site region 126264	908 bp downstream
Tssr126265	transcription start site region 126265	880 bp downstream
Tssr126266	transcription start site region 126266	841 bp downstream
Tssr126267	transcription start site region 126267	14 bp downstream
Tssr126268	transcription start site region 126268	561 bp upstream
Tssr126269	transcription start site region 126269	647 bp upstream
Tssr126270	transcription start site region 126270	1306 bp upstream
Tssr126271	transcription start site region 126271	1324 bp upstream
Tssr126272	transcription start site region 126272	1349 bp upstream
Tssr126273	transcription start site region 126273	1376 bp upstream
Tssr126274	transcription start site region 126274	1420 bp upstream
Tssr126275	transcription start site region 126275	1429 bp upstream
Tssr126276	transcription start site region 126276	1462 bp upstream
Tssr126277	transcription start site region 126277	1527 bp upstream
Tssr126278	transcription start site region 126278	1563 bp upstream
Tssr129260	transcription start site region 129260	917 bp upstream
Tssr129261	transcription start site region 129261	878 bp upstream
Tssr129262	transcription start site region 129262	865 bp upstream
Tssr129263	transcription start site region 129263	849 bp upstream
Tssr129264	transcription start site region 129264	796 bp upstream
Tssr129265	transcription start site region 129265	585 bp downstream
Tssr129266	transcription start site region 129266	620 bp downstream
Tssr129267	transcription start site region 129267	652 bp downstream
Tssr129268	transcription start site region 129268	714 bp downstream
Tssr129269	transcription start site region 129269	1422 bp downstream
Tssr129270	transcription start site region 129270	1443 bp downstream
Tssr129271	transcription start site region 129271	1487 bp downstream