rs220030936 SNP Detail

Summary

• ID
  rs220030936
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGCAACT CTTCATCACT
  TAATTCCTTA CCCTTCAAAT TGAAAGCTAA TTTTCTGCTC CTCTCTAACA ACTGATTTTC
  ATATTGTGAC TTTCGGTTAT CAAGTATTTC TTGGCTTTTT TTAAGACTGA TATGTTCATT
  GCATTTCCGT CTGGTGTCTG AAATAAGTGT GTCTTTAAGG ATTTGTAGCT TGTGTTCAAA
  W
  TTTGTTTTCC ACTGAAACAA TATTTCACTA TCTGGGTCTT TTTCAAAATA TTTGTCAAAT
  TGTTCTTTGA TGGTTTCATA TTTCTTGCTA AGTGGATCCT CCAGTAAATT AGATGTGAGT
  GTCAGGATTT TACCATTTTG AATCTGAATG TTCAGCTGAT TGTCTAAGTC CAGTACATGA
  CTCCTTAGCT CCCAGATCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372628545	MGP_WTSI_7_113649702	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220030936					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372628545	MGP_WTSI_7_113649702	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105395 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74126	transcription start site region 74126	1995 bp upstream
Tssr74127	transcription start site region 74127	1844 bp upstream
Tssr74128	transcription start site region 74128	1764 bp upstream
Tssr74129	transcription start site region 74129	1233 bp upstream
Tssr74130	transcription start site region 74130	1184 bp upstream
Tssr74131	transcription start site region 74131	973 bp upstream
Tssr74132	transcription start site region 74132	797 bp upstream
Tssr74133	transcription start site region 74133	140 bp upstream
Tssr74134	transcription start site region 74134	79 bp downstream
Tssr74135	transcription start site region 74135	162 bp downstream
Tssr74136	transcription start site region 74136	230 bp downstream
Tssr74137	transcription start site region 74137	296 bp downstream
Tssr74138	transcription start site region 74138	326 bp downstream
Tssr74139	transcription start site region 74139	360 bp downstream
Tssr74140	transcription start site region 74140	415 bp downstream
Tssr74141	transcription start site region 74141	815 bp downstream
Tssr74142	transcription start site region 74142	958 bp downstream