rs220034500 SNP Detail

Summary

• ID
  rs220034500
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163445339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA ACTCACCCTG AGGAAGGGGG
  V
  GGGGGGGGGG GGGGATGGAG CGGGG                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss915795829	MGP_WTSI_2_163603419	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	G	C	C	G	G	G	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220034500					SNP	C	C	C	C	A	C	C	G	C	C	G	G	G	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915795829	MGP_WTSI_2_163603419	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163445339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12638	CpG island 12638			420 bp distal
Rr397464	regulatory region 397464			579 bp downstream
Rr569433	regulatory region 569433			1986 bp distal
Rr569434	regulatory region 569434			1087 bp distal
Rr569435	regulatory region 569435			1386 bp distal
Rr569436	regulatory region 569436			1190 bp distal
Rr569437	regulatory region 569437			116 bp distal
Tssr21475	transcription start site region 21475			1110 bp downstream
Tssr21476	transcription start site region 21476			1060 bp downstream
Ttpal	tocopherol (alpha) transfer protein-like			Intron
				Noncoding-Transcript-Variant