rs220040351 SNP Detail

Summary

• ID
  rs220040351
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68507482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTTTA ATCCAATTTT
  ATGATATGCC CTGAGATCAT ATACTCACAG ATAGCATTCA TTGATACTGA CTAAACATGT
  TTGTGTGTGT GTGCTGTGTA TCTATGTGTG TGTAAATATG TATGTATGTA TGTATGTATG
  TATGTATGTA TGTATGTATG TTCTTAAGTA CCCACACACA CACCACAAAA GTTAAAGAAA
  W
  ATAGATCAAG ATCTTAAGAG AGAGCAAGAG ATGCATGGGA GGGGTTGAAA AATGAGAGAT
  AAGGGGATAA CTGATGTAAT TATAACTTTA AAAAATCACT TCGTTTTTTT GTTTCTGTGT
  CCCTGCATTT TTTTGCCTGC TTATGGATCC CATTTCCCTA ACTGAGCCAC TGACTTGATG
  TGCTGGAGAA GCAGGAATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321154726	CHEV_4_68250279	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220040351					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68507482 () rs orientation: forward

Symbol	Name	Function Class
Tssr37618	transcription start site region 37618	1333 bp downstream