rs220041162 SNP Detail

Summary

• ID
  rs220041162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103216690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGCTTG AAACAAAGGT
  TCTGAGCCAT TACCTGATCC ACCGCCTAAA AACAAGCCCA AAGCTGGAGT AAGCACAGCT
  TCCTGGACCC CTGCTGCCCT TTCTTTAAAA TCACACACTT TGTACATGAA GCTAACTCTT
  CTCTAAAGGA AAAAAAAATC TCCCAATTAA AATGAAGACA TCATTGGATT AAAAATATGG
  R
  TAGCTTGAAT ACAGGTAGCT GACACATGAT TACTATACAA CTAACATCCC AGCAAAAAAG
  TATGGAGCAA ACCCAGCCTT GTAGTTGTGA CTGTTTTCCT GACCCAAGTT CACAGGCAAG
  GATATGAGAA GCTCACCAAA ATGCGTTGCT TTTGTATATA CACCATCAAA TGCAAGTTAC
  CAGGGGTAAA TATAGGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392294202	MGP_WTSI_14_103378471	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220041162					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392294202	MGP_WTSI_14_103378471	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103216690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6810	CpG island 6810	1795 bp proximal
Kctd12	potassium channel tetramerisation domain containing 12	within coordinates
Rr404259	regulatory region 404259	355 bp upstream
Rr496944	regulatory region 496944	561 bp distal
Rr496945	regulatory region 496945	434 bp proximal
Tssr126949	transcription start site region 126949	854 bp upstream
Tssr130053	transcription start site region 130053	1328 bp upstream
Tssr130054	transcription start site region 130054	1283 bp upstream
Tssr130055	transcription start site region 130055	1117 bp upstream
Tssr130056	transcription start site region 130056	683 bp upstream
Tssr130057	transcription start site region 130057	579 bp upstream
Tssr130058	transcription start site region 130058	492 bp downstream
Tssr130059	transcription start site region 130059	520 bp downstream
Tssr130060	transcription start site region 130060	1262 bp downstream