rs220041986 SNP Detail

Summary

• ID
  rs220041986
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40692287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTTAGA TAAAGAGGGG
  CAGAGCTAGA AGACTGCCCA GAAGGATTCT ATGAAGGTTG AATTTTTCTT TACACGACAC
  AATAACTTTC CCAGCCTGTT TTATCATGTG AACAGAGACA GACGTAGTCA CTAAAATCTA
  AGCAAACCAG TAAAGTGGTG CAGTAACTTC AGCTTGCAAG AATATGGAAA GGCACAGTCA
  M
  AGCATGCGAG GGTTGCTGGG TGTGGTCTGG AAGCCACCCT GTCCGGGCTT CTGTCCTGGG
  TATGCAGGAA TCTCCGAGCT TATGTTTGAC GGTACTTCTG TCTGTGCTTC CGAGGAAACA
  GATGTGCAGA GCATTGGCAT GGTGGCAGGA GCAGTGACAG GCATAGTGGC AGGAGCCCTG
  CTCATTTTCC TCCTGATATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322919571	CHEV_9_40589074	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220041986					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40692287 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	1260 bp proximal
Gm16096	predicted gene 16096	within coordinates
Tssr84467	transcription start site region 84467	626 bp downstream
Tssr84468	transcription start site region 84468	85 bp upstream
Tssr84469	transcription start site region 84469	137 bp upstream
Tssr84470	transcription start site region 84470	1286 bp upstream
Tssr84471	transcription start site region 84471	1413 bp upstream