rs220043053 SNP Detail

Summary

• ID
  rs220043053
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:126861447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAACTTC CATAGACTCC
  CTTTTCCTCG AGGATGCAGA AGCGGAGTCT GACACCTTGC GTCTCCCAGG CTCCCCCCCC
  CCCCGAATAC GCACCACCAC CCACACGCCG GCAAAGGGAG GGGAGCCAAG CGGACCACGG
  CCCCCGCCCC TCCCCCTCCC CGCCGGCCAC CGAGCTTTGT CCCACCTGCC GAGGGGACCC
  S
  GGTGCCGCCT CGGGCCGCCC CTCCCTCCGG CCGTCGACCA CCGCGCCACC CGTGAGCTCC
  GGGCTGCTCG GGGCCGGCCG CGCCCCGCCC CCCGCCCGCC CGCCCGCCCG CCTGCCCGCA
  GCCCGCAGCC CGCAGACGGC CCGCGGCCTC ACCTCACCTA CCCTCTTTCG GGGGCCGGTC
  TCCACCTCCC GCTCCGCCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363166583	MGP_WTSI_4_126644898	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220043053					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363166583	MGP_WTSI_4_126644898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126861447 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4933424C08Rik	RIKEN cDNA 4933424C08 gene			546 bp upstream
Cpgi14832	CpG island 14832			within coordinates
Gm68857	predicted gene, 68857			587 bp downstream
Rr398497	regulatory region 398497			411 bp upstream
Rr599780	regulatory region 599780			within coordinates
Rr599781	regulatory region 599781			471 bp proximal
Rr599782	regulatory region 599782			557 bp proximal
Tssr39026	transcription start site region 39026			773 bp upstream
Tssr43405	transcription start site region 43405			338 bp downstream
Tssr43406	transcription start site region 43406			396 bp downstream
Tssr43407	transcription start site region 43407			470 bp downstream
Tssr43408	transcription start site region 43408			505 bp downstream
Tssr43409	transcription start site region 43409			526 bp downstream
Tssr43410	transcription start site region 43410			546 bp downstream
Tssr43411	transcription start site region 43411			1189 bp downstream
Zmym4	zinc finger, MYM-type 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant