rs220045953 SNP Detail

Summary

• ID
  rs220045953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98811247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCGGGTGA GGCTGTGCGG
  CTGCCTGTGG GTCATTCGGT ACCGGCTCGC GCCAGAACCC GTTGAAGCTC CAGCCGCGAG
  ACCAGCCTGA GAACTAAAAC CCTTGTGCAG CCTGCGAGAG GGGAGAAGGA CCCGAGGCTC
  CAAGGCGTTC GGCTGTGCAC TGTCTAGCTA AGGCAGTGCT CATTCTTAAC GCACAACTTG
  R
  GATAGGGTGG ACCGCGGCTT CCTCGGTAAA CTGGACGCCC AGCGGGCGCC GAGCAGCTAG
  CAAAGCGCAT CAGCCATTTT CCGAGCGTCT TTGGTAACCC TTCCGGAGAG GGCACGCCAG
  GAGGGGGAAG AAAAAAAAAA AAAAAGAAAG AAAGAGGCGG GCCTGCACCG GGGCCTCGGC
  CCAGAAGCCA CACCCTCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222360	CHEV_4_98589701	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220045953					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98811247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	within coordinates
Rr398351	regulatory region 398351	201 bp upstream
Rr595805	regulatory region 595805	691 bp distal
Rr595806	regulatory region 595806	310 bp proximal
Rr595807	regulatory region 595807	600 bp proximal
Rr595808	regulatory region 595808	880 bp proximal
Tssr37901	transcription start site region 37901	73 bp downstream
Tssr37902	transcription start site region 37902	649 bp upstream
Tssr37903	transcription start site region 37903	714 bp upstream
Tssr37904	transcription start site region 37904	741 bp upstream
Tssr37905	transcription start site region 37905	805 bp upstream
Tssr37906	transcription start site region 37906	835 bp upstream
Tssr37907	transcription start site region 37907	898 bp upstream
Usp1	ubiquitin specific peptidase 1	800 bp upstream