rs220046175 SNP Detail

Summary

• ID
  rs220046175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117550952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACCCAG AACTCCCAGA
  GACTAAACCA CCAGCCAAAG AGCATACAGA AAGGAGCCAG AACTCTAGAC ACATAAAAAG
  CAGAGGATGG AACTCACTTA TCTGACATCA GTGGGAGGGG AGGGAGGCTT GATGCCCGGC
  ATGGGGGATG CTAGAGCCAC GTGAGGCAGG AGTGGGTAAG TGGGTGGCGG AGCACCCCCA
  Y
  AGAGGCAAAG GAGAGGAGGA AGAAGGGGGA TTGGATTGAG AGATTGTGGA GGGGTAACTG
  GGAAGGGGGA TATCATTTAA AATGTAAATG AATAAAAAGA TTAATTAAAA AAAAAAAGTC
  TCTGTTTCCC AGGGATGAAA GATAGGGCTT CTCAGAGGGA GCCACTGACA GCAGGCTGTC
  AATCATTGGG GGCTTTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498917	CHEV_10_117152103	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220046175					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117550952 () rs orientation: forward

Symbol	Name	Function Class
Gm66624	predicted gene, 66624	916 bp downstream
Gm67727	predicted gene, 67727	1313 bp upstream
Rr212986	regulatory region 212986	952 bp distal
Rr212987	regulatory region 212987	649 bp proximal
Rr225986	regulatory region 225986	850 bp proximal
Rr385358	regulatory region 385358	1949 bp upstream
Tssr99470	transcription start site region 99470	191 bp downstream