rs220051553 SNP Detail

Summary

• ID
  rs220051553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76130921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGATCAGA AAGCGCAGGG
  CTTCAGGACT CTGACTTAGG ACGCCTACAG ACAATAGCAG ACTGCCTAGG CAAGCTGGAC
  CAAGCAGTTT CTGTAGGCTC AGAAGCTCCG GGACAGGTGA CAACATTCGC CTTACATCAA
  GGCCCCGCCC CGCCCCGCCC CGCCCAAGAC CCCACCCCAC CACAAGGCCC CGCCCCATCA
  Y
  AAGGCCCCGC CCCATCATAA GGCCCGCCCA GTCACAAGGC TCTTCTGCGT CTCCCCAGCG
  GCAGGCGCAG GCCCAAGCAA TCCGGCCGCC CAGCGGGTGC AGGTGCGGAC GCACCGGCCA
  TCACCGCGCG CGGCTGCGCA GCGGGCACCG TAAGCACCGG TCTCTGGCTC CCGGGAGCGG
  TGAGTCCCCC CCGACCAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611506	MGP_WTSI_15_76077151	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220051553					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611506	MGP_WTSI_15_76077151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76130921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7222	CpG island 7222	within coordinates
Grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	43 bp upstream
Mir6953	microRNA 6953	1470 bp upstream
Tssr4637	transcription start site region 4637	132 bp upstream
Tssr131720	transcription start site region 131720	26 bp upstream
Tssr131721	transcription start site region 131721	95 bp upstream
Tssr131722	transcription start site region 131722	117 bp upstream
Tssr131723	transcription start site region 131723	291 bp upstream
Tssr131724	transcription start site region 131724	650 bp upstream
Tssr131725	transcription start site region 131725	805 bp upstream
Tssr131726	transcription start site region 131726	877 bp upstream
Tssr131727	transcription start site region 131727	943 bp upstream
Tssr131728	transcription start site region 131728	963 bp upstream
Tssr131729	transcription start site region 131729	1102 bp upstream
Tssr131730	transcription start site region 131730	1123 bp upstream
Tssr131731	transcription start site region 131731	1186 bp upstream
Tssr131732	transcription start site region 131732	1211 bp upstream
Tssr131733	transcription start site region 131733	1256 bp upstream
Tssr131734	transcription start site region 131734	1273 bp upstream
Tssr131735	transcription start site region 131735	1340 bp upstream
Tssr131736	transcription start site region 131736	1384 bp upstream
Tssr131737	transcription start site region 131737	1557 bp upstream
Tssr131738	transcription start site region 131738	1724 bp upstream
Tssr131739	transcription start site region 131739	1775 bp upstream
Tssr131740	transcription start site region 131740	1794 bp upstream
Tssr131741	transcription start site region 131741	1880 bp upstream
Tssr134959	transcription start site region 134959	87 bp upstream
Tssr134960	transcription start site region 134960	891 bp downstream
Tssr134961	transcription start site region 134961	1293 bp downstream
Tssr134962	transcription start site region 134962	1423 bp downstream