rs220052215 SNP Detail

Summary

• ID
  rs220052215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:39007768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTGCCC TGATTCTTCC
  TTAGTTTATA TATATATATA TATATTTAAG TATTTGAGAA TTACATACAA GACTTTTCCT
  TTTGCATCAT TTCCAGCCTT CCTTGTCTAC ATGACAATTC CTCCTATATT CTTCCACTTT
  CTCTAAAATT CATGATTTTT AAAAAATACT TGTGGACAAA AGCACATGGT CTTCAGAAGA
  R
  CAATTATTGG AGCCTCTGAA ACCATAGGGT GTTCACATCT TTTCTTCCTT GTGCTCTTCA
  TTATTTCCTT AATCCTCTTT TTCCTATCTA ATCATTCTTG ACAATTTTTT TTTCCTATTT
  TTTTCTTTCT CTTTAAGCAC TGAGATTTCA TTATGGTGTT GTCCCCTTTC CATGGCTGTT
  CCTTCTGGTC TCCTGCTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322911095	CHEV_9_38904057	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220052215					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:39007768 () rs orientation: forward

Symbol	Name	Function Class
Gm47085	predicted gene, 47085	495 bp upstream