rs220053616 SNP Detail

Summary

• ID
  rs220053616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85869489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGTGAGA AGGACAGAAG
  AAATGGGGGT GCGGACATTT CTATAAGTAA TCAAATGGAT TTCTGGGCAA GCTTGTGTTC
  CTGCCAATGC TCGGTCACTC TAAAGAGGGT GAACGACCAG TACACCTTGC AGCAAGTGGC
  ACCACATTTA CCTTTGCTCA ACTAATCCTC CAAAGCACAG CATTGCTGTA AGTCAGAATT
  Y
  CCTCCACTTG CCTGGAATCA GTATTACGCC TTCATCTCTT CATGCCATCC CTTTGCAATA
  CAAATAGCTC AGGGTGATTC AAAATCTACT CAGATACCTG GACACATCCT ATCAAATGTA
  CAGAAGTTGC ATCATACACT TGAATGGAAA CCATAGTGTA ACTGTCTGAC TAGTCTTCTT
  AGTTTCCCTC TGCATGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386744714	MGP_WTSI_12_87163665	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220053616					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386744714	MGP_WTSI_12_87163665	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85869489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	1752 bp proximal
Erg28	ergosterol biosynthesis 28	within coordinates
Rr258254	regulatory region 258254	289 bp distal
Rr265707	regulatory region 265707	111 bp proximal
Rr265708	regulatory region 265708	511 bp proximal
Rr268756	regulatory region 268756	1889 bp distal
Rr268757	regulatory region 268757	889 bp distal
Tssr114435	transcription start site region 114435	1918 bp upstream
Tssr117107	transcription start site region 117107	1781 bp downstream
Tssr117108	transcription start site region 117108	1791 bp downstream
Tssr117109	transcription start site region 117109	1845 bp downstream
Ttll5	tubulin tyrosine ligase-like family, member 5	1928 bp upstream