rs220053967 SNP Detail

Summary

• ID
  rs220053967
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122827802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCAGTGG AGTTATCAGT
  AGAATTGCTT TCTGGTAGAC TTAGTTTGTA CACGTAGTCC CAATAATCAT ATGACCTGGA
  GGAATCAAAA TTATATCTAC ATATACTGCG ATTGTCCATA ATGAACAGAT CACGGTATAC
  AAATACGGGC ACACACATCA CAAAGGCTAC CACCCAGACA CATCCACAGA TGGCGAAGGC
  K
  GTTCTCACGT TTCGATGATT CTGGCACCAG ATTGGCTTAT GTACTATCAG ACATCGGTCC
  AGGCTAATGG CAGTAAGCAG GAAGACACTG GCAAACATGT TGAGAATAAT GATGGATGGG
  ATAAGTTTGC ACAGGAACAA GCCATAGGGC CAGTGTCCTT GGAGAATCAG GTGAGCCAAG
  GAGAAGGGCA AGGAGAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914797	MGP_WTSI_6_122800861	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220053967					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914797	MGP_WTSI_6_122800861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122827802 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Rr142690	regulatory region 142690	1847 bp proximal
Tssr58711	transcription start site region 58711	334 bp downstream
Tssr58712	transcription start site region 58712	253 bp downstream
Tssr58713	transcription start site region 58713	185 bp downstream
Tssr62979	transcription start site region 62979	1998 bp upstream
Tssr62980	transcription start site region 62980	1982 bp upstream
Tssr62981	transcription start site region 62981	1963 bp upstream
Tssr62982	transcription start site region 62982	1804 bp upstream
Tssr62983	transcription start site region 62983	1346 bp upstream
Tssr62984	transcription start site region 62984	1250 bp upstream
Tssr62985	transcription start site region 62985	1211 bp upstream
Tssr62986	transcription start site region 62986	916 bp upstream
Tssr62987	transcription start site region 62987	790 bp upstream
Tssr62988	transcription start site region 62988	724 bp upstream
Tssr62989	transcription start site region 62989	564 bp upstream
Tssr62990	transcription start site region 62990	511 bp upstream
Tssr62991	transcription start site region 62991	482 bp upstream
Tssr62992	transcription start site region 62992	432 bp upstream
Tssr62993	transcription start site region 62993	339 bp upstream
Tssr62994	transcription start site region 62994	162 bp upstream
Tssr62995	transcription start site region 62995	108 bp upstream
Tssr62996	transcription start site region 62996	within coordinates
Tssr62997	transcription start site region 62997	41 bp downstream
Tssr62998	transcription start site region 62998	96 bp downstream
Tssr62999	transcription start site region 62999	167 bp downstream
Tssr63000	transcription start site region 63000	224 bp downstream
Tssr63001	transcription start site region 63001	247 bp downstream