rs220058868 SNP Detail

Summary

• ID
  rs220058868
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119233053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGAGGGC AGAGATAACT
  TCTTTGCTAC CCGAGCCCAC TGTTGGGAAG CGGTTTCAGT GCTGTCCTGG AGTGGTAGAG
  GCAACGCGGT GCTCAGGGTG AACATTTTGT TTCTTTCTGC CACTCCCCGA AGTGTTGCTC
  CAGAGATTTT TCACCCCAAG AATGAGAGCC TGGAAGTGAT GGAAAACAGT GGTCTGCTCC
  R
  GGGAGGGCGG CAGCAGGCTG ACCCCAAGTT ATAGGACCAA CCTCTAGTCG GCTCTTGACT
  TACTGGATTT CTGCACCTGG ACATGTATGT GCCTTGCCTC TTTTAAGTTT AGGTTTGTTG
  AAAGCATTGT CTCAGGACCG TTCGCCTCAG ACTAGAAGTC TGTATGTACA TCACTGCTCC
  TGTTTGTTCC AGTTTGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323219427	CHEV_9_119313105	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220058868					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119233053 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	within coordinates
Cpgi22474	CpG island 22474	343 bp distal
Gm47320	predicted gene, 47320	1121 bp downstream
Rr688481	regulatory region 688481	1533 bp distal
Rr688483	regulatory region 688483	within coordinates
Rr688484	regulatory region 688484	1446 bp distal
Rr688485	regulatory region 688485	1286 bp distal
Tssr87682	transcription start site region 87682	1834 bp downstream
Tssr87683	transcription start site region 87683	1762 bp downstream
Tssr87684	transcription start site region 87684	1718 bp downstream
Tssr91983	transcription start site region 91983	501 bp upstream