rs220058949 SNP Detail

Summary

• ID
  rs220058949
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110664083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGATTAACG TGACCCAAAA
  GATAGTTTCC TTGTTTGTTT ATCTTTAATA TAGGCTTCGG TTTCACTCCC CATACCTTTC
  CTTTGGGTTA CTCCCACCCT GTATTTCCTA TTTCCGCATC TTTTCCTGCT GACAAAACGA
  TTACTAAGAT TAGAAAGAAA AGGGCTGGAG AGATAGCTCA GTGGTTAAAA GCATGGACTG
  S
  TCTTCCAGAG GACCCAGGTT CAATTCCCAA CACCCACAAG GCAGCTCACA GCTGTCCATA
  ACTCCAATAT CTGACACCTT CACACAAACA TACATGTAGG CAAAACACCA ATACACATAA
  AATAATAAAT AAAAGCTTAG AAAGAAAAGA AGCCGGGAAA GAGGAAGCCA GGCAGTGGTG
  GCATAAGCCT TTTTAATCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387341315	MGP_WTSI_12_111935859	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220058949					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387341315	MGP_WTSI_12_111935859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110664083 () rs orientation: forward

Symbol	Name	Function Class
4932703K07Rik	RIKEN cDNA 4932703K07 gene	533 bp downstream
Cpgi5120	CpG island 5120	508 bp distal
Gm60092	predicted gene, 60092	1416 bp upstream
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	1254 bp upstream
Rr403501	regulatory region 403501	1047 bp downstream
Rr472969	regulatory region 472969	764 bp distal
Rr472970	regulatory region 472970	926 bp proximal
Rr472971	regulatory region 472971	1427 bp proximal
Tssr115230	transcription start site region 115230	1735 bp downstream
Tssr115231	transcription start site region 115231	1699 bp downstream
Tssr115232	transcription start site region 115232	1014 bp downstream
Tssr115233	transcription start site region 115233	1405 bp upstream
Tssr117786	transcription start site region 117786	1841 bp upstream
Tssr117787	transcription start site region 117787	1790 bp upstream
Tssr117788	transcription start site region 117788	1773 bp upstream
Tssr117789	transcription start site region 117789	1387 bp upstream
Tssr117790	transcription start site region 117790	1330 bp upstream
Tssr117791	transcription start site region 117791	1231 bp upstream
Tssr117792	transcription start site region 117792	1202 bp upstream