rs220064120 SNP Detail

Summary

• ID
  rs220064120
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70356643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGACAGG TGTGGATTGT
  ACTCAGGTCT CTGGAAGCCG GGAGTCCTTG GTGATGGTTG TTTTCCCTAT GGGAAAAGTT
  TACAGGGAAA AACCAGACCC ATCTACTGAT GATCTCTTGA TTTGTTGTTG GTGGTGGTGG
  TGGTGATTTT GTGTGTCAAA GTTAGATCAA ATACCTCACT ATGCAGCCTA GGCTGGCTTG
  K
  AACTTGGATT CTCCTGCCTC CACTTTCCAA GGTGTGCAGT CCAGTTCTGC ATGTCTTGAA
  CCAGATATTG GGATTTTGAG AAGCTTCAAC CATCCTTGCC TTCAACAAGG ATGCAAGTGC
  AAGCCAAGTA AAAGAAGAGC CGAGATGTGG GGATAATTGT ACGTTGTGAG GAACTCCCGT
  GGGCGGTGGT ATCCAGAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375092149	MGP_WTSI_8_72427892	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220064120					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375092149	MGP_WTSI_8_72427892	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70356643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	402 bp distal
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	1435 bp upstream
Rr400888	regulatory region 400888	510 bp downstream
Rr664595	regulatory region 664595	1799 bp distal
Rr664596	regulatory region 664596	791 bp distal
Rr664597	regulatory region 664597	1284 bp distal
Rr664598	regulatory region 664598	1165 bp distal
Rr664599	regulatory region 664599	210 bp proximal
Tssk6	testis-specific serine kinase 6	475 bp downstream
Tssr77689	transcription start site region 77689	1799 bp downstream
Tssr81546	transcription start site region 81546	1986 bp upstream
Tssr81547	transcription start site region 81547	1969 bp upstream
Tssr81548	transcription start site region 81548	771 bp upstream