rs220065074 SNP Detail

Summary

• ID
  rs220065074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74540688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTATGTG TATCGACCAG
  GGAATAAGCA CCAGCTTGCC CATTTCCTTG TGTAATAACA TATTGTTTAA TTCACTGCAT
  AAGAATTCAC ATCTAGTGTC TCCTCCATAT CTTGGATGTT TGCTGAATCC TTGGGTGTCT
  AGAGGTGGAA AGGGAAAGAG AGAGGAAAAA AAAACCATTT TAATGGACCA GCAAAATTAG
  R
  GCCCACTGGC CTTTTCAAGA ATTAAGAATT TTGCTGACAG ATGGTGGCAG AAACCCTTTA
  ATTAAAATTA TCCAAGTTCA TGAGAACTTT CTCTTAGGAT ACAAATGACC TGCACAAAGG
  GGCGCTATGC TTCAGTTCAT CTCCACTAGT AACTTAGAGC TCCAACATCT AATGCGGATA
  CTCAGAAACA CCTTGCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485083	MGP_WTSI_2_74548401	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220065074					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485083	MGP_WTSI_2_74548401	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74540688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11801	CpG island 11801	1395 bp proximal
Gm38462	predicted gene, 38462	within coordinates
Hoxd3	homeobox D3	1649 bp upstream
Hoxd3os1	homeobox D3, opposite strand 1	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559370	regulatory region 559370	1206 bp distal
Rr559371	regulatory region 559371	143 bp distal
Rr559372	regulatory region 559372	1093 bp proximal
Rr559373	regulatory region 559373	1594 bp proximal
Rr559374	regulatory region 559374	1718 bp proximal
Tssr18431	transcription start site region 18431	630 bp downstream
Tssr18432	transcription start site region 18432	1514 bp upstream
Tssr18433	transcription start site region 18433	1544 bp upstream
Tssr18434	transcription start site region 18434	1567 bp upstream
Tssr18435	transcription start site region 18435	1614 bp upstream
Tssr18436	transcription start site region 18436	1777 bp upstream